PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G089100.1
Common NamePHAVU_001G089100g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 313aa    MW: 33147 Da    PI: 9.5473
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G089100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.13.6e-3967149283
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                         a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+   a++s+s ++
  Phvul.001G089100.1  67 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaAAGNSVSPQG 149
                         789******************************************************************88853333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.1E-3272168IPR005333Transcription factor, TCP
PROSITE profilePS5136928.01673127IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDPKSSKQPL AQEVVPNFLS LPQQQSPPPQ QQQQQGNNNN MGENKPAEMK DFQIVVAEKD  60
ESKKQLAPKR SSNKDRHTKV EGRGRRIRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQA  120
EPSIIAATGT GTIPASALAA AGNSVSPQGA SLSSGLHQKI DELGGANMGS GSSRTSWQMV  180
GGNLGRPHVA TGLWPPHVSG FGFQTSSGPS NATLGTESSN YLQKIGFPGF DLPAAATNMG  240
HMSFTSILGG GGTQQMPGLE LGLSQDGHIG VLNPLALSQI YQQMGQATRV QQQQQQQHQQ  300
TPAKDDSQGS GQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBMTransfer from Glyma.19G095300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161676.10.0hypothetical protein PHAVU_001G089100g
SwissprotQ9LSD51e-83TCP20_ARATH; Transcription factor TCP20
TrEMBLV7CWP00.0V7CWP0_PHAVU; Uncharacterized protein
STRINGGLYMA19G26560.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33393269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.14e-83TCP family protein